SNP Profiles of PNG 215 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
1._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
2._GC-01-107-6-04	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
3._GC-01-107-6-04	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
4._GC-01-107-6-04	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
5._GC-01-107-6-04	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
6._GC-01-084-5-01	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
7._GC-01-084-5-01	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
8._GC-01-084-5-01	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
9._GC-01-084-5-01	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
10._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
11._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
12._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
13._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
14._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
15._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
16._PNG_215	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
17._GC-01-107-6-04	CT	GG	GG	CT	TT	AA	CT	GT	CC	CT	AA	AA	CT	AA
18._RUQ_1293	_	GG	GG	CT	_	_	_	GT	_	_	_	_	CT	AA
19._RUQ_1293	CT	GG	GG	CT	TT	AC	CT	GT	CC	CT	AA	AA	CT	AA
20._RUQ_1293	_	_	GG	_	_	_	_	GT	_	CT	_	AA	_	AA
21._RUQ_1293	AG	GG	CC	AG	AA	AC	AG	AA	_	_	AA	AA	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
1._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
2._GC-01-107-6-04	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
3._GC-01-107-6-04	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
4._GC-01-107-6-04	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
5._GC-01-107-6-04	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
6._GC-01-084-5-01	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
7._GC-01-084-5-01	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
8._GC-01-084-5-01	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
9._GC-01-084-5-01	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
10._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
11._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
12._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
13._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
14._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
15._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
16._PNG_215	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
17._GC-01-107-6-04	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
18._RUQ_1293	_	_	_	_	CC	CC	GT	_	CC	CC	CC	GT	CT	CC
19._RUQ_1293	CC	AA	GG	TT	CC	CC	GT	AA	CC	CC	CC	GT	CT	CC
20._RUQ_1293	_	_	_	_	_	CC	GT	AA	_	CC	CC	_	_	AC
21._RUQ_1293	GG	AA	GG	AA	GG	GG	AC	_	GG	CC	CC	AC	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
1._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
2._GC-01-107-6-04	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
3._GC-01-107-6-04	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
4._GC-01-107-6-04	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
5._GC-01-107-6-04	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
6._GC-01-084-5-01	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
7._GC-01-084-5-01	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
8._GC-01-084-5-01	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
9._GC-01-084-5-01	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
10._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
11._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
12._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
13._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
14._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
15._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
16._PNG_215	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
17._GC-01-107-6-04	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
18._RUQ_1293	AA	_	AT	CC	AG	GG	AA	CT	GG	AC	_	_	X_X	X_X
19._RUQ_1293	AA	GG	AT	CC	AG	GG	AA	CT	GG	AC	AT	GG	X_X	X_X
20._RUQ_1293	_	_	_	_	AG	_	_	_	_	AC	_	_	X_X	X_X
21._RUQ_1293	_	GG	AT	GG	AG	CC	AA	AG	CC	AC	AT	GG	X_X	X_X

Input profile: PNG_215

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1604 1

Dapeng Zhang, 2016

1._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1604 4

Dapeng Zhang, 2016

2._PNG_215 GC-01-107-6-04

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

3._PNG_215 GC-01-107-6-04

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._PNG_215 GC-01-107-6-04

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._PNG_215 GC-01-107-6-04

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._PNG_215 GC-01-084-5-01

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._PNG_215 GC-01-084-5-01

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._PNG_215 GC-01-084-5-01

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

9._PNG_215 GC-01-084-5-01

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

10._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1604 5

Dapeng Zhang, 2016

11._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1604 3

Dapeng Zhang, 2016

12._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1604 2

Dapeng Zhang, 2016

13._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1501 4

Dapeng Zhang, 2016

14._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1501 3

Dapeng Zhang, 2016

15._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1501 2

Dapeng Zhang, 2016

16._PNG_215

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1501 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._PNG_215 GC-01-107-6-04

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._PNG_215 RUQ_1293

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._PNG_215 RUQ_1293

98.8 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._PNG_215 RUQ_1293

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

21._PNG_215 RUQ_1293

47.1 %
35 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25